Package: ComplexMap
Title: A Toolset for the Functional Analysis and Interactive
        Visualization of Protein Complex Data
Version: 2.0.0
Date: 2026-02-18
Authors@R: 
    person(given = "Qingzhou",
           family = "Zhang",
           role = c("aut", "cre"),
           email = "zqzneptune@hotmail.com",
           comment = c(ORCID = "0000-0001-9540-2624"))
Description: Provides a comprehensive workflow for the quality control,
        refinement, functional enrichment, and network-based analysis
        of protein complex datasets. ComplexMap allows for the
        quantitative evaluation of predicted complexes against a
        reference and provides an interactive Cytoscape.js-powered
        Shiny explorer to navigate the functional landscape of a
        protein complex map.
URL: https://zqzneptune.github.io/ComplexMap,
        https://github.com/zqzneptune/ComplexMap
BugReports: https://github.com/zqzneptune/ComplexMap/issues
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.3.3
Depends: R (>= 4.5)
Imports: AnnotationDbi, clue, dplyr, future, future.apply, GO.db,
        igraph, jsonlite, magrittr, Matrix, msigdbr, RColorBrewer,
        reactome.db, rlang, shiny, stringr, tibble, tidyr
Suggests: colorspace, knitr, org.Hs.eg.db, philentropy, progressr,
        rmarkdown, testthat (>= 3.0.0)
BiocViews: Software, Proteomics, NetworkAnalysis, Visualization,
        Enrichment, GeneSetEnrichment
LazyData: true
VignetteBuilder: knitr
Config/testthat/edition: 3
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libpng-dev
        libuv1-dev libxml2-dev libssl-dev zlib1g-dev
Repository: https://zqzneptune.r-universe.dev
Date/Publication: 2026-02-24 02:28:27 UTC
RemoteUrl: https://github.com/zqzneptune/ComplexMap
RemoteRef: HEAD
RemoteSha: 83415bf695207de6f524601d6689030a23f7a9ee
NeedsCompilation: no
Packaged: 2026-10-09 10:24:55 UTC; root
Author: Qingzhou Zhang [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-9540-2624>)
Maintainer: Qingzhou Zhang <zqzneptune@hotmail.com>